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You can add a second account by duplicating the first account.
1. Delete other employees from the second account
2. Change this employee's tax option to her paychecks as a contractor.

How to handle employees and contractors
http://www.halfpricesoft.com/business-blog/post/2012/04/18/How-to-Handle-Payroll-Tasks-for-Both-W2-Employee-and-1099-Contractors.aspx 

At the end of this year, you need to print W2 form for this employee from the first account. You also need to print 1099-misc form for this employee based on the information from the second account.
If you have further questions, please contact us directly at services@halfpricesoft.com
Small business payroll & tax software solution
http://www.halfpricesoft.com 
We are using ezpaycheck payroll software now and like it. very easy to use. We have 6 full time employees. However one employee will start to work as part time contractor next month. How can I generate the paychecks for her once she switch from salaried employee to contractor? She will be paid by hourly rate in the future.

THX.